Introducing scPRINT-2
A Next-Generation Cell Foundation Model
Projects
Criss-Cross Attention
Breaking the Quadratic Bottleneck in Cell Foundation Models
The scPRINT-2 Corpus
350 Million Cells, 16 Organisms: Building the Largest Single-Cell Training Dataset
Xpressor
Towards foundation models that learn across biological scales
scPRINT
A large cell model for gene network inference: lessons learned, design choices, and what I would do differently
A new hierarchical classification methodology
How to perform classification of structured data like ontologies?
BenGRN
a package to assess predicted gene networks, see my blog post on GRNs for more details
GRnnData
A storage mechanism for gene networks built on anndata, see my blog post on GRNs for more details
scDataloader
An open community tool for AI and scRNAseq
genepy
An open community tool for genomics.
how to work with multiple epigenomic assays on similar samples
creating an open source method for epigenomics aggregation.
AMLproject
Influence of the Core Regulatory Circuitry on AML dependencies
DepMap Omics: How to
How DepMap Omics data is made. How to process it Yourself
WRN dependencies
Repeat expansions confer WRN dependence in microsatellite-unstable cancers
What Enhancers can tell us about Dependencies
Influence of the Core Regulatory Circuitry on AML dependencies: Part 1.
PiPle: the startup
A big decision has been made. With Paul Best, we decided in the summer 2018 to launch PiPle…
PyCUB
During my master thesis I had the chance to work with It a multidisciplinary team involving teachers in CS and Biology and a PhD student.
CaImAn
An open source tool for scalable calcium imaging data analysis.
No Larsen Festival
The NoLarsen Festival is a music festival that I managed and organised during the year 2016–2017 as part of my student society.
PiPle: The Beginnings
PiPle is the next generation professional communication tool.